I'm a bit of a light weight regards technical on the omega and I must admit I'm a bit confused with you discription of the problem.
I.e not sure what you mean by the pass?
Sorry if I am telling you something you already know. But I to have a GLS pre facelift and the air direction dampers or flaps are operated by the vacuum from the engine. Not electric but driven by air pressure. Problem I have had in the past have been the small vac pipes becoming disconnected or elbows cracking, stopping a good vacuum. This stops the dampers from moving, when this happens the direction usualy stays in one position.
There is a sort of Vac accumalator, not sure the correct name, but I'm sure someone more technical could tell you how it works, but this seems to store the vac created by the vac pipes. This can go faulty.
There is also the heater bypass valve. Again this can fail and I think divert your hot water away for the heater element in your unit.
Sorry I cant be more knowledgeable but that is the basics I have sust' out, I'm sure someone else could give you a better discription. good luck
