1. without doubt they carefully designed the engine.. but design is towards low emissions and a daily usage engine imo.. I also agree that trial error will be an expensive game.. My thermodynamic knowledge was good at university but that was a quarter century ago
still can work on that but
a visit to friends at mechanical engineering dept may be useful .. besides whatever calculations you make you will rely on some assumptions which will change the picture.. I still think that after some solution theories
it must be experimented
.. question is do I have that budget ? answer is no unfortunately..
Consider the engine to be like a central heating system. If you don't balance the flow between all radiators, some rooms will get too hot and some will get too cold. Change the system somewhere and the radiators need to be re-balanced. It's the same with an engine, in that you need to avoid areas of stagnant coolant flow around heat sources. The back cylinders are furthest from the pump, so, without looking in detail at the coolant circuit, one might theorise that maintaining adequate coolant flow around them might be a challenge, hence they might well run hot when the engine is tuned. I am sure that GM would have tested an engine with all the required monitoring devices fitted and decided that their cooling system was "good enough". They may have accepted some compromises there, perhaps the rear cylinders do run slightly hotter, but "good enough" in their case was to deliver 218 BHP occasionally and spend most of its' life on a motorway or pootling around town.
As soon as you change things, though, you've thrown their work away and need to make sure what you put in place is better - without the luxury of all the tools and budget they had at their disposal!
2. I do think that a variable rate pump can easily be designed by Kevin Wood
Yes, but why bother? The engine already has a nice, simple, elegant variable rate pump by virtue of the fact that it's driven by the crankshaft. Generally, the faster the crank turns, the greater the cooling demand. An electric pump would not be able to draw on a couple of horsepower of energy like the standard pump probably does at high engine speed, and it would be much more complex, expensive and less reliable. It would have to offer a tangible benefit to bother, and I'm not yet convinced it would.

3. that also requires a trial error in machine shop which wont be expensive..
Yep. You can't easily get a feel for what's going on inside the cooling system as very little of it is accessible. All you can do is measure temperature at a few points and theorise about what's happening. All the more reason not to change too much, IMHO.
4.rear cylinders really need attention .. but before changing anything in design , theoritically a 1:1 working model must be tested outside a car with some temperature sensors at some points .. and thats a hell of a lot of job.. so back to square one , trial and error 
Yep.

First job IMHO would be to figure out exactly what's going on in those cylinders. What is the exact failure mode? Pistons getting too hot and melting? Pistons getting too tight in the bore and picking up on the bore? Damage due to detonation, etc? More intake air to those cylinders so they run slightly lean?
Also, is there an easier way to combat this? If you just run the engine cooler and improve the pump inlet as detailed by 2Woody does it help? Can you improve oil flow to the piston bases using some oil jets? Can you run a little looser piston/bore clearance? Can you run a slightly richer mixture? Are you actually at the limits of what a cast piston can achieve in that engine, and just seeing the rear cylinders fail marginally before the rest, so should you just go forged and forget the cooling issue?
This is the problem with stepping into the unknown with an engine that's not got a lot of tuning pedigree. The answers take some time and money to discover. Get yourself a C20LET instead and that work has all been done, and paid for, by someone else!