Personally, I can't think of any reason that flushing one way rather than the other makes any difference, it's all kinda symmetrical in there. But hey, it can't do any harm, and while you're at it, the more flushing the merrier.
Just don't assume that because you're squirting your hose in one 'big' pipe and it's flowing well out of t'other, that all the little inner pipes are clear; keep at it, and max out that hose flow. Pop some random bit of hose on the current 'exit' hose, down to the deck, to prevent you drenching the engine bay, and ideally seal the hosepipe to the current 'entry' hose for the same reason, and to maximise flow.
May as well do it once and well than have to revisit, let alone change a non-leaking matrix. :-?
N.B. This advice isn't aimed at the OP, who has solved his problem courtesy of the ever-generous Welung, it's more for general information, or my best attempt at it.
