Update -
Right. Let the motor run for about twenty minutes before I had to nip out (in the wife's car obviously

) and then another twenty minutes when I got back. I did think that it sounded quieter, but not sure.
Decided to take it for a run, but it was horrible to drive. Not the smooth luxury gem that it was, before I got the tools out!
Was missing a little, down on power, and the throttle was really strange.
Got home again after only a ten minute run, and remembered to do the pedal trick. Extra codes now -
Existing -
0120 Throttle/pedalPosition sensor/switch "A" circuit range/performanceProblem
0220 Throttle/pedalPosition sensor/switch "B" circuit range/performanceProblem
1110 Intake Manifold Valve 1 Open
1111 Intake Manifold Valve 2 Open
1700 Service Vehicle Soon Request from Transmission Control Module
New -
P0325 Knock sensor 1 circuit high input (Bank 1 or single sensor) or Knock sensor 1 circuit low input (Bank 1 or single sensor)
P0330 Knock sensor 2 circuit high input (Bank 2) or Knock sensor 2 circuit low input (Bank 2
0300 Random/multiple cylinder misfire detected
0301 Cylinder 1 Misfire Detected
0304 Cylinder 4 Misfire Detected
So instead of getting better, we're getting worse

Definitely something wrong with the throttle so that ties in with the codes, as does the misfire; though why one on opposite banks? Knock sensor?
Sorry guys but here we go again!

Also, eml came on for a short time on two occasions during the drive.